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perf: improve performance of update metrics #1329

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@wForget wForget commented Jan 23, 2025

Which issue does this PR close?

Closes #1328.

Rationale for this change

Improve performance of update metrics

What changes are included in this PR?

  • Define a NativeMetricNode proto type to pass all metric nodes at once to avoid iterative jni calls.
  • Call update metrics when releasing plan to reduce the number of calls.

How are these changes tested?

after this

sql metrics are displayed correctly:

cpu profile:
image

@wForget wForget changed the title Improve performance of update metrics perf: improve performance of update metrics Jan 23, 2025
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codecov-commenter commented Jan 23, 2025

Codecov Report

Attention: Patch coverage is 90.90909% with 1 line in your changes missing coverage. Please review.

Project coverage is 39.06%. Comparing base (f09f8af) to head (71394ae).
Report is 19 commits behind head on main.

Files with missing lines Patch % Lines
...a/org/apache/spark/sql/comet/CometMetricNode.scala 83.33% 0 Missing and 1 partial ⚠️
Additional details and impacted files
@@              Coverage Diff              @@
##               main    #1329       +/-   ##
=============================================
- Coverage     56.12%   39.06%   -17.07%     
- Complexity      976     2071     +1095     
=============================================
  Files           119      263      +144     
  Lines         11743    60742    +48999     
  Branches       2251    12909    +10658     
=============================================
+ Hits           6591    23729    +17138     
- Misses         4012    32530    +28518     
- Partials       1140     4483     +3343     

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wForget commented Jan 23, 2025

Although the proportion of udpate metric in cpu profile has been greatly reduced, the tpcds/tpch benchmark of small data set has not been improved.

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@mbutrovich may be interested in reviewing this as well

@@ -508,9 +505,6 @@ pub unsafe extern "system" fn Java_org_apache_comet_Native_executePlan(
let next_item = exec_context.stream.as_mut().unwrap().next();
let poll_output = exec_context.runtime.block_on(async { poll!(next_item) });

// Update metrics
update_metrics(&mut env, exec_context)?;
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I wonder if we should add a config so that we can choose between frequent metrics updates vs just updating once the query completes. It can sometimes be helpful to see live metrics.

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Per-batch is probably always overkill. For long-running jobs is there a period that makes sense? It looks like Spark History defaults to 10s.

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I do like the idea of updating metrics every N seconds

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I think checking a coarse-grained clock (i.e., CLOCK_MONOTONIC_COARSE) to see if N seconds has elapsed to produce updated metrics would be a reasonable compromise on performance impact vs. fresh metrics.

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I also like the idea of updating every N seconds. One good reason for updating frequently is to keep updating the live UI.

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@mbutrovich Thank you for your idea, sounds great to me, I will try to do that later.

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andygrove commented Jan 23, 2025

Based on a single run of TPC-H @ 100GB, I see approximately 2% improvement in TPC-H (325s on main vs 318s with this PR)

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wForget commented Feb 5, 2025

@andygrove @mbutrovich @parthchandra Thank you for your review and sorry for the late reply. I have just finished my Chinese New Year holiday and will continue this work later.

@wForget wForget marked this pull request as ready for review February 5, 2025 06:46
Comment on lines 78 to 81
spark_plan.children().iter().for_each(|child_plan| {
let child_node = to_native_metric_node(child_plan).unwrap();
native_metric_node.children.push(child_node);
});
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If you change this to a for loop rather than using for_each then we can use ? to handle any error condition.

Suggested change
spark_plan.children().iter().for_each(|child_plan| {
let child_node = to_native_metric_node(child_plan).unwrap();
native_metric_node.children.push(child_node);
});
for child_plan in spark_plan.children() {
let child_node = to_native_metric_node(child_plan)?;
native_metric_node.children.push(child_node);
}

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Thank you for your suggestion, changed. I am not familiar with rust yet, and I hope to learn rust by contributing to comet. 😁

@@ -233,11 +242,12 @@ pub unsafe extern "system" fn Java_org_apache_comet_Native_createPlan(
stream: None,
runtime,
metrics,
metrics_update_interval,
metrics_last_update_time: Instant::now(),
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https://github.com/jedisct1/rust-coarsetime

@andygrove thoughts on a coarse time crate? The overhead on these clock_gettime() as used underneath Instant::now() can really add up. Maybe it's a premature optimization, but I also don't want a "death by 1000 cuts" scenario with gettime() all over the place.

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I ran coarsetime's benchmark on my laptop:

coarsetime_now():          126.93 M/s
coarsetime_recent():       340.32 M/s
coarsetime_elapsed():      142.64 M/s
coarsetime_since_recent(): 340.34 M/s
stdlib_now():              51.37 M/s
stdlib_elapsed():          42.42 M/s

I'm a bit stunned that Rust's stdlib doesn't provide a nice way to get coarse time on its own, since the performance difference can be quite large and a lot of tasks don't need nanosecond precision.

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Improve performance of update metrics
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